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    J1G47_RS11550 PDDEXK nuclease domain-containing protein [ Glaesserella parasuis ]

    Gene ID: 66619929, updated on 8-Feb-2024

    Summary

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    Gene symbol
    J1G47_RS11550
    Gene description
    PDDEXK nuclease domain-containing protein
    Locus tag
    J1G47_RS11550
    Gene type
    protein coding
    Organism
    Glaesserella parasuis (strain: YHP1818, nat-host: swine)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Glaesserella
    Old locus tag
    J1G47_11550
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    Genomic context

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    Location:
    plasmid: unnamed

    NZ_CP071488.1Genomic Context describing neighboring genes Neighboring gene GIY-YIG nuclease family protein Neighboring gene AraC family transcriptional regulator Neighboring gene thiamine phosphate synthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP071488.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. Hu P, et al. PLoS Biol, 2009 Apr 28. PMID 19402753, Free PMC Article
    2. The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function. Kosinski J, et al. BMC Bioinformatics, 2005 Jul 12. PMID 16011798, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    PDDEXK nuclease domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP071488.1 Reference assembly

      Range
      1064..2086
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005821902.1 MULTISPECIES: PDDEXK nuclease domain-containing protein [Pasteurellaceae]

      See identical proteins and their annotated locations for WP_005821902.1

      UniProtKB/TrEMBL
      B8F7P1, C5RYN4
      Conserved Domains (2) summary
      pfam06250
      Location:180 → 323
      DUF1016; Protein of unknown function (DUF1016)
      pfam17761
      Location:15 → 156
      DUF1016_N; DUF1016 N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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