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    LOC122281393 probable WRKY transcription factor 2 [ Carya illinoinensis ]

    Gene ID: 122281393, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122281393
    Gene description
    probable WRKY transcription factor 2
    Locus tag
    CIPAW_11G211300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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    Genomic context

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    See LOC122281393 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 11 NC_056762.1 (45402603..45407380)

    Chromosome 11 - NC_056762.1Genomic Context describing neighboring genes Neighboring gene peroxisome biogenesis protein 5 Neighboring gene uncharacterized LOC122282885 Neighboring gene COP9 signalosome complex subunit 6a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056762.1 Chromosome 11 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptomic Analysis Provides Insights into Grafting Union Development in Pecan (Carya illinoinensis). Mo Z, et al. Genes (Basel), 2018 Feb 5. PMID 29401757, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable WRKY transcription factor 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056762.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      45402603..45407380
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043092837.1 → XP_042948771.1  probable WRKY transcription factor 2

      UniProtKB/TrEMBL
      A0A8T1PAB2, A0A922DTR7
      Conserved Domains (2) summary
      smart00774
      Location:537 → 594
      WRKY; DNA binding domain
      pfam03106
      Location:321 → 375
      WRKY; WRKY DNA -binding domain
    Nucleotide Protein
    Heading Accession and Version

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