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    foxa2 forkhead box A2 [ Alosa sapidissima (American shad) ]

    Gene ID: 121693689, updated on 22-Mar-2024

    Summary

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    Gene symbol
    foxa2
    Gene description
    forkhead box A2
    See related
    EnsemblRapid:ENSASDG00000004528
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alosa sapidissima
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa
    Orthologs
    human zebrafish all
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    Genomic context

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    See foxa2 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current fAloSap1.pri (GCF_018492685.1) 19 NC_055975.1 (12009821..12012869, complement)

    Chromosome 19 - NC_055975.1Genomic Context describing neighboring genes Neighboring gene paired box 1a Neighboring gene uncharacterized LOC121692984 Neighboring gene protein kinase D3 Neighboring gene molybdenum cofactor synthesis 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_055975.1 Chromosome 19 Reference fAloSap1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    forkhead box protein A2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Alosa sapidissima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAloSap1.pri Primary Assembly

    Genomic

    1. NC_055975.1 Reference fAloSap1.pri Primary Assembly

      Range
      12009821..12012869 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042073283.1 → XP_041929217.1  forkhead box protein A2

      Related
      ENSASDP00000023995.1, ENSASDT00000008602.1
      Conserved Domains (3) summary
      smart00339
      Location:150 → 238
      FH; FORKHEAD
      COG5025
      Location:149 → 363
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam08430
      Location:18 → 149
      Forkhead_N; Forkhead N-terminal region
    Nucleotide Protein
    Heading Accession and Version

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