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    ctc1 CTS telomere maintenance complex component 1 [ Oncorhynchus tshawytscha (Chinook salmon) ]

    Gene ID: 112227369, updated on 18-Jun-2024

    Summary

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    Gene symbol
    ctc1
    Gene description
    CTS telomere maintenance complex component 1
    See related
    Ensembl:ENSOTSG00005046832
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus tshawytscha
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Orthologs
    human zebrafish all
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    Genomic context

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    See ctc1 in Genome Data Viewer
    Location:
    chromosome: LG15
    Exon count:
    22
    Annotation release Status Assembly LG Location
    101 current Otsh_v2.0 (GCF_018296145.1) LG15 NC_056443.1 (39495716..39558581)
    100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 28 NC_037124.1 (17091379..17217039)

    Linkage Group LG15 - NC_056443.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121839434 Neighboring gene high mobility group protein B2 Neighboring gene transferrin receptor 2 Neighboring gene uncharacterized LOC112240955

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere maintenance via telomere lengthening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CST complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CST complex subunit CTC1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Otsh_v2.0 Primary Assembly

    Genomic

    1. NC_056443.1 Reference Otsh_v2.0 Primary Assembly

      Range
      39495716..39558581
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042298580.1 → XP_042154514.1  CST complex subunit CTC1 isoform X1

      Related
      ENSOTSP00005101907.2, ENSOTST00005110227.2
      Conserved Domains (1) summary
      cl40423
      Location:475 → 532
      cupin_RmlC-like; RmlC-like cupin superfamily

    2. XM_042298581.1 → XP_042154515.1  CST complex subunit CTC1 isoform X2

      Related
      ENSOTSP00005120878.1, ENSOTST00005134907.1
      Conserved Domains (1) summary
      cl40423
      Location:475 → 532
      cupin_RmlC-like; RmlC-like cupin superfamily

    3. XM_042298582.1 → XP_042154516.1  CST complex subunit CTC1 isoform X3

      Conserved Domains (1) summary
      cl40423
      Location:446 → 503
      cupin_RmlC-like; RmlC-like cupin superfamily
    Nucleotide Protein
    Heading Accession and Version

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