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    Usp42 ubiquitin specific peptidase 42 [ Dipodomys spectabilis (banner-tailed kangaroo rat) ]

    Gene ID: 122113678, updated on 22-Mar-2024

    Summary

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    Gene symbol
    Usp42
    Gene description
    ubiquitin specific peptidase 42
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dipodomys spectabilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
    Orthologs
    human mouse all
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    Genomic context

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    See Usp42 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current ASM1905484v1 (GCF_019054845.1) Unplaced Scaffold NW_024870775.1 (8470562..8517204)

    NW_024870775.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 1 Neighboring gene ankyrin repeat domain 61 Neighboring gene U6 spliceosomal RNA Neighboring gene cytohesin 3 Neighboring gene peptidyl-prolyl cis-trans isomerase A-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024870775 Unplaced Scaffold Reference ASM1905484v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 42

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Dipodomys spectabilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1905484v1

    Genomic

    1. NW_024870775.1 Reference ASM1905484v1

      Range
      8470562..8517204
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042686741.1 → XP_042542675.1  ubiquitin carboxyl-terminal hydrolase 42

      Conserved Domains (2) summary
      PRK12678
      Location:831 → 1059
      PRK12678; transcription termination factor Rho; Provisional
      cd02661
      Location:109 → 409
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    Nucleotide Protein
    Heading Accession and Version

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