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    LOC122293182 phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like [ Carya illinoinensis ]

    Gene ID: 122293182, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122293182
    Gene description
    phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like
    Locus tag
    CIPAW_01G010000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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    Genomic context

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    See LOC122293182 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 1 NC_056752.1 (1416203..1416879, complement)

    Chromosome 1 - NC_056752.1Genomic Context describing neighboring genes Neighboring gene probable receptor-like protein kinase At5g24010 Neighboring gene probable receptor-like protein kinase At5g24010 Neighboring gene probable receptor-like protein kinase At5g24010 Neighboring gene nifU-like protein 2, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056752.1 Chromosome 1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phenylalanine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phenylalanyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of phenylalanine-tRNA ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056752.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      1416203..1416879 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043101674.1 → XP_042957608.1  phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like

      UniProtKB/TrEMBL
      A0A8T1RHR3
      Conserved Domains (1) summary
      PLN02853
      Location:1 → 92
      PLN02853; Probable phenylalanyl-tRNA synthetase alpha chain
    Nucleotide Protein
    Heading Accession and Version

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