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    LOC122312016 uncharacterized LOC122312016 [ Carya illinoinensis ]

    Gene ID: 122312016, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122312016
    Gene description
    uncharacterized LOC122312016
    Locus tag
    CIPAW_05G006900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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    Genomic context

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    See LOC122312016 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 5 NC_056756.1 (971912..976408, complement)

    Chromosome 5 - NC_056756.1Genomic Context describing neighboring genes Neighboring gene ceramide synthase LOH2-like Neighboring gene ferredoxin--nitrite reductase, chloroplastic-like Neighboring gene thioredoxin M3, chloroplastic-like Neighboring gene transfer RNA arginine (anticodon UCU)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056756.1 Chromosome 5 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC122312016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056756.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      971912..976408 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043126831.1 → XP_042982765.1  uncharacterized protein LOC122312016

      UniProtKB/TrEMBL
      A0A8T1QDQ0, A0A922EUV1
      Conserved Domains (2) summary
      cd08824
      Location:455 → 517
      LOTUS; LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7
      cd10910
      Location:47 → 173
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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