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    LOC122295221 transcription factor TGA9-like [ Carya illinoinensis ]

    Gene ID: 122295221, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122295221
    Gene description
    transcription factor TGA9-like
    Locus tag
    CIPAW_14G100400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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    Genomic context

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    See LOC122295221 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 14 NC_056765.1 (25588066..25596226)

    Chromosome 14 - NC_056765.1Genomic Context describing neighboring genes Neighboring gene transmembrane 9 superfamily member 5 Neighboring gene F-box/LRR-repeat protein At1g67190-like Neighboring gene uncharacterized LOC122294076 Neighboring gene U4/U6 small nuclear ribonucleoprotein Prp31 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056765.1 Chromosome 14 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptomic Analysis Provides Insights into Grafting Union Development in Pecan (Carya illinoinensis). Mo Z, et al. Genes (Basel), 2018 Feb 5. PMID 29401757, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TGA9-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056765.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      25588066..25596226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043104337.1 → XP_042960271.1  transcription factor TGA9-like isoform X2

      UniProtKB/TrEMBL
      A0A8T1NCY5, A0A922AJE4
      Conserved Domains (1) summary
      cd14708
      Location:195 → 247
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain

    2. XM_043104336.1 → XP_042960270.1  transcription factor TGA9-like isoform X1

      UniProtKB/TrEMBL
      A0A8T1NL94, A0A922AJ84
      Conserved Domains (1) summary
      cd14708
      Location:195 → 247
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain

    3. XM_043104338.1 → XP_042960272.1  transcription factor TGA9-like isoform X3

      UniProtKB/TrEMBL
      A0A8T1ND80, A0A922AH85
      Conserved Domains (1) summary
      cd14708
      Location:116 → 168
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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