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    bi T-box transcription factor bifid [ Bombus pyrosoma ]

    Gene ID: 122570445, updated on 10-Oct-2024

    Summary

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    Gene symbol
    bi
    Gene description
    T-box transcription factor bifid
    See related
    EnsemblRapid:ENSBPYG00000013771
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bombus pyrosoma
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Melanobombus
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    Location:
    chromosome: LG8
    Exon count:
    9
    Annotation release Status Assembly LG Location
    100 current ASM1482585v1 (GCF_014825855.1) LG8 NC_057777.1 (3794032..3962066)

    Linkage Group LG8 - NC_057777.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122569954 Neighboring gene LIM domain kinase 1 Neighboring gene Fanconi anemia group J protein homolog Neighboring gene coiled-coil domain-containing protein 86

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057777.1 Chromosome LG8 Reference ASM1482585v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    optomotor-blind protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bombus pyrosoma Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1482585v1

    Genomic

    1. NC_057777.1 Reference ASM1482585v1

      Range
      3794032..3962066
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043732766.1 → XP_043588701.1  optomotor-blind protein isoform X1

      Related
      ENSBPYP00000022965.1, ENSBPYT00000033709.1
      Conserved Domains (1) summary
      cd20188
      Location:319 → 506
      T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins

    2. XM_043732767.1 → XP_043588702.1  optomotor-blind protein isoform X2

      Conserved Domains (1) summary
      cd20188
      Location:319 → 506
      T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins

    3. XM_043732768.1 → XP_043588703.1  optomotor-blind protein isoform X3

      Conserved Domains (1) summary
      cd20188
      Location:319 → 503
      T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins
    Nucleotide Protein
    Heading Accession and Version

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