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    AGMAT agmatinase [ Gallus gallus (chicken) ]

    Gene ID: 373942, updated on 10-Oct-2024

    Summary

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    Symbol
    AGMATprovided by CGNC
    Full Name
    agmatinaseprovided by CGNC
    Primary source
    CGNC:48969
    See related
    Ensembl:ENSGALG00010020903
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    AUH
    Orthologs
    human mouse all
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    Genomic context

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    See AGMAT in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 21 NC_052552.1 (4903995..4906334)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 21 NC_052593.1 (4936916..4939254)

    Chromosome 21 - NC_052552.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 43 member B Neighboring gene cytidine deaminase Neighboring gene PTEN induced putative kinase 1 Neighboring gene DnaJ heat shock protein family (Hsp40) member C16 Neighboring gene caspase 9 Neighboring gene chymotrypsin C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables agmatinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in putrescine biosynthetic process from arginine, using agmatinase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    agmatinase, mitochondrial
    Names
    agmatine ureohydrolase (agmatinase)
    NP_989474.2
    XP_040507022.1
    XP_046787072.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204143.4 → NP_989474.2  agmatinase, mitochondrial precursor

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000329
      UniProtKB/Swiss-Prot
      Q90XD2
      UniProtKB/TrEMBL
      A0A8V0ZMD3
      Related
      ENSGALP00010029833.1, ENSGALT00010050539.1
      Conserved Domains (1) summary
      cd11592
      Location:43 → 331
      Agmatinase_PAH; Agmatinase-like family includes proclavaminic acid amidinohydrolase

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052552.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4903995..4906334
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040651088.2 → XP_040507022.1  agmatinase, mitochondrial isoform X1

      UniProtKB/Swiss-Prot
      Q90XD2
      UniProtKB/TrEMBL
      A0A8V0ZGB9
      Related
      ENSGALP00010029825.1, ENSGALT00010050527.1
      Conserved Domains (1) summary
      cd11592
      Location:43 → 331
      Agmatinase_PAH; Agmatinase-like family includes proclavaminic acid amidinohydrolase

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052593.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4936916..4939254
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046931116.1 → XP_046787072.1  agmatinase, mitochondrial isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q90XD2.1 GenPept UniProtKB/Swiss-Prot:Q90XD2

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