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    SCAF8 SR-related CTD associated factor 8 [ Mauremys mutica (yellowpond turtle) ]

    Gene ID: 123366189, updated on 22-Mar-2024

    Summary

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    Gene symbol
    SCAF8
    Gene description
    SR-related CTD associated factor 8
    Locus tag
    KIL84_016565
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mauremys mutica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
    Orthologs
    human mouse all
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    Genomic context

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    See SCAF8 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current ASM2049712v1 (GCF_020497125.1) 3 NC_059074.1 (116856922..117009235)

    Chromosome 3 - NC_059074.1Genomic Context describing neighboring genes Neighboring gene CNKSR family member 3 Neighboring gene uncharacterized LOC123366197 Neighboring gene TIAM Rac1 associated GEF 2 Neighboring gene transcription factor B1, mitochondrial Neighboring gene claudin 20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_059074.1 Chromosome 3 Reference ASM2049712v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SR-related and CTD-associated factor 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mauremys mutica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2049712v1 Primary Assembly

    Genomic

    1. NC_059074.1 Reference ASM2049712v1 Primary Assembly

      Range
      116856922..117009235
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045009407.1 → XP_044865342.1  SR-related and CTD-associated factor 8 isoform X3

      Conserved Domains (3) summary
      smart00360
      Location:454 → 522
      RRM; RNA recognition motif
      PHA03247
      Location:622 → 1030
      PHA03247; large tegument protein UL36; Provisional
      cl02544
      Location:1 → 110
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

    2. XM_045009405.1 → XP_044865340.1  SR-related and CTD-associated factor 8 isoform X1

      UniProtKB/TrEMBL
      A0A9D4AXT2
      Conserved Domains (3) summary
      smart00360
      Location:656 → 724
      RRM; RNA recognition motif
      PHA03247
      Location:824 → 1232
      PHA03247; large tegument protein UL36; Provisional
      cd17004
      Location:182 → 312
      CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8

    3. XM_045009404.1 → XP_044865339.1  SR-related and CTD-associated factor 8 isoform X1

      UniProtKB/TrEMBL
      A0A9D4AXT2
      Conserved Domains (3) summary
      smart00360
      Location:656 → 724
      RRM; RNA recognition motif
      PHA03247
      Location:824 → 1232
      PHA03247; large tegument protein UL36; Provisional
      cd17004
      Location:182 → 312
      CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8

    4. XM_045009406.1 → XP_044865341.1  SR-related and CTD-associated factor 8 isoform X2

      Conserved Domains (3) summary
      smart00360
      Location:655 → 723
      RRM; RNA recognition motif
      PHA03247
      Location:823 → 1231
      PHA03247; large tegument protein UL36; Provisional
      cd17004
      Location:182 → 312
      CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8
    Nucleotide Protein
    Heading Accession and Version

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