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    LOC122993222 elongation factor 1-delta-like [ Thunnus albacares (yellowfin tuna) ]

    Gene ID: 122993222, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC122993222
    Gene description
    elongation factor 1-delta-like
    See related
    EnsemblRapid:ENSTABG00005010497
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Thunnus albacares
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus
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    Genomic context

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    See LOC122993222 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current fThuAlb1.1 (GCF_914725855.1) 12 NC_058117.1 (19728677..19741030, complement)

    Chromosome 12 - NC_058117.1Genomic Context describing neighboring genes Neighboring gene protein THEM6 Neighboring gene finTRIM family, member 67 Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like Neighboring gene transfer RNA leucine (anticodon UAA) Neighboring gene vasoactive intestinal polypeptide receptor 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058117.1 Chromosome 12 Reference fThuAlb1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Substitutions in the Glycogenin-1 Gene Are Associated with the Evolution of Endothermy in Sharks and Tunas. Ciezarek AG, et al. Genome Biol Evol, 2016 Oct 5. PMID 27614233, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of eukaryotic translation elongation factor 1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    elongation factor 1-delta-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Thunnus albacares Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fThuAlb1.1

    Genomic

    1. NC_058117.1 Reference fThuAlb1.1

      Range
      19728677..19741030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044367191.1 → XP_044223126.1  elongation factor 1-delta-like isoform X6

      Related
      ENSTABP00005026029.1, ENSTABT00005026337.1
      Conserved Domains (1) summary
      cd00292
      Location:208 → 296
      EF1B; Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl ...

    2. XM_044367192.1 → XP_044223127.1  elongation factor 1-delta-like isoform X7

      Related
      ENSTABP00005026030.1, ENSTABT00005026338.1
      Conserved Domains (1) summary
      cd00292
      Location:201 → 289
      EF1B; Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl ...

    3. XM_044367190.1 → XP_044223125.1  elongation factor 1-delta-like isoform X5

      Related
      ENSTABP00005026026.1, ENSTABT00005026334.1
      Conserved Domains (1) summary
      cd00292
      Location:220 → 308
      EF1B; Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl ...

    4. XM_044367194.1 → XP_044223129.1  elongation factor 1-delta-like isoform X9

      Conserved Domains (1) summary
      cd00292
      Location:150 → 238
      EF1B; Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl ...

    5. XM_044367193.1 → XP_044223128.1  elongation factor 1-delta-like isoform X8

      Conserved Domains (1) summary
      cd00292
      Location:169 → 257
      EF1B; Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl ...

    6. XM_044367189.1 → XP_044223124.1  elongation factor 1-delta-like isoform X4

      Conserved Domains (1) summary
      cd00292
      Location:339 → 427
      EF1B; Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl ...

    7. XM_044367187.1 → XP_044223122.1  elongation factor 1-delta-like isoform X2

      Conserved Domains (1) summary
      cd00292
      Location:358 → 446
      EF1B; Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl ...

    8. XM_044367186.1 → XP_044223121.1  elongation factor 1-delta-like isoform X1

      Related
      ENSTABP00005026024.1, ENSTABT00005026332.1
      Conserved Domains (1) summary
      cd00292
      Location:363 → 451
      EF1B; Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl ...

    9. XM_044367188.1 → XP_044223123.1  elongation factor 1-delta-like isoform X3

      Conserved Domains (1) summary
      cd00292
      Location:344 → 432
      EF1B; Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl ...
    Nucleotide Protein
    Heading Accession and Version

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