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    su(r) dihydropyrimidine dehydrogenase su(r) [ Tribolium madens (black flour beetle) ]

    Gene ID: 123005691, updated on 23-May-2024

    Summary

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    Gene symbol
    su(r)
    Gene description
    dihydropyrimidine dehydrogenase su(r)
    See related
    EnsemblRapid:LOC123005691
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium madens
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    See su(r) in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current Tmad_KSU_1.1 (GCF_015345945.1) Unplaced Scaffold NW_025400975.1 (5348536..5355778)

    NW_025400975.1Genomic Context describing neighboring genes Neighboring gene lysozyme-like Neighboring gene sensory neuron membrane protein 2-like Neighboring gene pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial Neighboring gene uncharacterized LOC123005699 Neighboring gene follistatin-related protein 5-like Neighboring gene mediator complex subunit intersex

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_025400975 Unplaced Scaffold Reference Tmad_KSU_1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables dihydropyrimidine dehydrogenase (NADP+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron-sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables uracil binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 'de novo' pyrimidine nucleobase biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in thymine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in uracil catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dihydropyrimidine dehydrogenase [NADP(+)]

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tribolium madens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tmad_KSU_1.1

    Genomic

    1. NW_025400975.1 Reference Tmad_KSU_1.1

      Range
      5348536..5355778
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044399555.1 → XP_044255490.1  dihydropyrimidine dehydrogenase [NADP(+)] isoform X1

      Related
      XP_044255490.1, XM_044399555.1
      Conserved Domains (3) summary
      cd02940
      Location:523 → 825
      DHPD_FMN; Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and ...
      TIGR01944
      Location:910 → 997
      rnfB; electron transport complex, RnfABCDGE type, B subunit
      cl40752
      Location:53 → 503
      GltD; NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]

    2. XM_044399564.1 → XP_044255499.1  dihydropyrimidine dehydrogenase [NADP(+)] isoform X2

      Related
      XP_044255499.1, XM_044399564.1
      Conserved Domains (3) summary
      cd02940
      Location:397 → 699
      DHPD_FMN; Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and ...
      TIGR01944
      Location:784 → 871
      rnfB; electron transport complex, RnfABCDGE type, B subunit
      cl40752
      Location:2 → 377
      GltD; NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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