U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    RNF213 ring finger protein 213 [ Varanus komodoensis (Komodo dragon) ]

    Gene ID: 123036918, updated on 22-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    RNF213
    Gene description
    ring finger protein 213
    Locus tag
    EYD10_16393
    See related
    Ensembl:ENSVKKG00000016407
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Varanus komodoensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RNF213 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    69
    Annotation release Status Assembly Chr Location
    100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025336531.1 (1757890..1893775, complement)

    NW_025336531.1Genomic Context describing neighboring genes Neighboring gene neuronal pentraxin 1 Neighboring gene endonuclease V Neighboring gene solute carrier family 26 member 11 Neighboring gene N-sulfoglucosamine sulfohydrolase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_025336531 Unplaced Scaffold Reference ASM479886v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of non-canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sprouting angiogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase RNF213

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM479886v1

    Genomic

    1. NW_025336531.1 Reference ASM479886v1

      Range
      1757890..1893775 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044456452.1 → XP_044312387.1  E3 ubiquitin-protein ligase RNF213 isoform X3

      UniProtKB/TrEMBL
      A0A8D2LPD7
      Related
      ENSVKKP00000025482.1, ENSVKKT00000026097.1
      Conserved Domains (2) summary
      smart00382
      Location:2380 → 2493
      AAA; ATPases associated with a variety of cellular activities
      cl17238
      Location:3937 → 3976
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_044456451.1 → XP_044312386.1  E3 ubiquitin-protein ligase RNF213 isoform X2

      UniProtKB/TrEMBL
      A0A8D2LPD7
      Conserved Domains (2) summary
      smart00382
      Location:2422 → 2535
      AAA; ATPases associated with a variety of cellular activities
      cl17238
      Location:3979 → 4018
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. XM_044456450.1 → XP_044312385.1  E3 ubiquitin-protein ligase RNF213 isoform X1

      UniProtKB/TrEMBL
      A0A8D2LPD7
      Conserved Domains (2) summary
      smart00382
      Location:2423 → 2536
      AAA; ATPases associated with a variety of cellular activities
      cl17238
      Location:3980 → 4019
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    4. XM_044456453.1 → XP_044312388.1  E3 ubiquitin-protein ligase RNF213 isoform X4

      UniProtKB/TrEMBL
      A0A8D2LRN9
      Conserved Domains (2) summary
      smart00382
      Location:2423 → 2536
      AAA; ATPases associated with a variety of cellular activities
      cl17238
      Location:3980 → 4019
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.