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    CLP1 cleavage factor polyribonucleotide kinase subunit 1 [ Protopterus annectens (West African lungfish) ]

    Gene ID: 122811930, updated on 11-Apr-2024

    Summary

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    Gene symbol
    CLP1
    Gene description
    cleavage factor polyribonucleotide kinase subunit 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Protopterus annectens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Dipnomorpha; Ceratodontiformes; Lepidosirenoidei; Protopteridae; Protopterus
    Orthologs
    human mouse all
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    Genomic context

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    See CLP1 in Genome Data Viewer
    Location:
    chromosome: 9.part0
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current PAN1.0 (GCF_019279795.1) 9.part0 NC_056743.1 (1192606032..1192787961)

    Chromosome 9.part0 - NC_056743.1Genomic Context describing neighboring genes Neighboring gene serpin family G member 1 Neighboring gene uncharacterized LOC122811927 Neighboring gene yippee like 4 Neighboring gene fibrous sheath interacting protein 1 Neighboring gene zinc finger DHHC-type palmitoyltransferase 5 Neighboring gene ABC transporter G family member 9-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056743.1 Chromosome 9.part0 Reference PAN1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Salamander-like tail regeneration in the West African lungfish. Verissimo KM, et al. Proc Biol Sci, 2020 Sep 30. PMID 32933441, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polynucleotide 5'-hydroxyl-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyribonucleotide 5'-hydroxyl-kinase Clp1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Protopterus annectens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PAN1.0 Primary Assembly

    Genomic

    1. NC_056743.1 Reference PAN1.0 Primary Assembly

      Range
      1192606032..1192787961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044084105.1 → XP_043940040.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X2

      Conserved Domains (1) summary
      COG5623
      Location:13 → 424
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]

    2. XM_044084107.1 → XP_043940042.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X3

      Conserved Domains (1) summary
      COG5623
      Location:11 → 422
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]

    3. XM_044084104.1 → XP_043940039.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      Conserved Domains (1) summary
      COG5623
      Location:45 → 456
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]

    4. XM_044084106.1 → XP_043940041.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X3

      Conserved Domains (1) summary
      COG5623
      Location:11 → 422
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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