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    LOC123344587 ERI1 exoribonuclease 2-like [ Mauremys mutica (yellowpond turtle) ]

    Gene ID: 123344587, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC123344587
    Gene description
    ERI1 exoribonuclease 2-like
    Locus tag
    KIL84_014448
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mauremys mutica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
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    Genomic context

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    See LOC123344587 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current ASM2049712v1 (GCF_020497125.1) 11 NC_059082.1 (70070632..70109940, complement)

    Chromosome 11 - NC_059082.1Genomic Context describing neighboring genes Neighboring gene acyl-coenzyme A synthetase ACSM3, mitochondrial-like Neighboring gene uncharacterized LOC123344464 Neighboring gene acyl-CoA synthetase medium chain family member 3 Neighboring gene RNA exonuclease 5 Neighboring gene defective in cullin neddylation 1 domain containing 3 Neighboring gene LYR motif containing 1 Neighboring gene dynein axonemal heavy chain 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_059082.1 Chromosome 11 Reference ASM2049712v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5'-RNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3'-5' exonuclease eri-1-like; ERI1 exoribonuclease 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mauremys mutica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2049712v1 Primary Assembly

    Genomic

    1. NC_059082.1 Reference ASM2049712v1 Primary Assembly

      Range
      70070632..70109940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044980970.1 → XP_044836905.1  3'-5' exonuclease eri-1-like isoform X5

      Conserved Domains (2) summary
      cd06133
      Location:38 → 231
      ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
      cd11717
      Location:275 → 422
      THUMP_THUMPD1_like; THUMP domain-containing protein 1-like

    2. XM_044980969.1 → XP_044836904.1  ERI1 exoribonuclease 2-like isoform X4

      Conserved Domains (2) summary
      cd06133
      Location:38 → 231
      ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
      cd11717
      Location:304 → 451
      THUMP_THUMPD1_like; THUMP domain-containing protein 1-like

    3. XM_044980964.1 → XP_044836899.1  ERI1 exoribonuclease 2-like isoform X1

      UniProtKB/TrEMBL
      A0A9D4B8W3
      Conserved Domains (2) summary
      cd06133
      Location:38 → 231
      ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
      pfam05325
      Location:598 → 654
      DUF730; Protein of unknown function (DUF730)

    4. XM_044980967.1 → XP_044836902.1  ERI1 exoribonuclease 2-like isoform X3

      UniProtKB/TrEMBL
      A0A9D4B8W3
      Conserved Domains (2) summary
      cd06133
      Location:1 → 152
      ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
      pfam05325
      Location:519 → 575
      DUF730; Protein of unknown function (DUF730)

    5. XM_044980965.1 → XP_044836900.1  ERI1 exoribonuclease 2-like isoform X2

      UniProtKB/TrEMBL
      A0A9D4B8W3
      Conserved Domains (2) summary
      cd06133
      Location:31 → 224
      ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
      pfam05325
      Location:591 → 647
      DUF730; Protein of unknown function (DUF730)

    6. XM_044980968.1 → XP_044836903.1  ERI1 exoribonuclease 2-like isoform X3

      UniProtKB/TrEMBL
      A0A9D4B8W3
      Conserved Domains (2) summary
      cd06133
      Location:1 → 152
      ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
      pfam05325
      Location:519 → 575
      DUF730; Protein of unknown function (DUF730)
    Nucleotide Protein
    Heading Accession and Version