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    LHX1 LIM homeobox 1 [ Gallus gallus (chicken) ]

    Gene ID: 396381, updated on 10-Oct-2024

    Summary

    Symbol
    LHX1provided by CGNC
    Full Name
    LIM homeobox 1provided by CGNC
    Primary source
    CGNC:4028
    See related
    Ensembl:ENSGALG00010029197
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    LIM-1
    Orthologs
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    Genomic context

    See LHX1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (8872998..8878023)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (8609728..8614957)

    Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121107286 Neighboring gene uncharacterized LOC107054811 Neighboring gene uncharacterized LOC112530064 Neighboring gene apoptosis antagonizing transcription factor Neighboring gene acetyl-CoA carboxylase alpha Neighboring gene C17orf78 homolog

    Genomic regions, transcripts, and products

    Bibliography

    General protein information

    Preferred Names
    LIM/homeobox protein Lhx1
    Names
    LIM homeobox protein 1
    domesticus (clone 2.3 kB) lim-1
    homeobox protein Lim-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397359.1NP_001384288.1  LIM/homeobox protein Lhx1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000323
      UniProtKB/Swiss-Prot
      P53411
      UniProtKB/TrEMBL
      F1NX79
      Conserved Domains (3) summary
      cd09367
      Location:455
      LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
      cd09375
      Location:63118
      LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
      pfam00046
      Location:183237
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      8872998..8878023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046902298.1XP_046758254.1  LIM/homeobox protein Lhx1 isoform X1

      UniProtKB/TrEMBL
      F1NX79
      Related
      ENSGALP00010043250.1, ENSGALT00010070559.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      8609728..8614957
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046929920.1XP_046785876.1  LIM/homeobox protein Lhx1 isoform X1

      UniProtKB/TrEMBL
      F1NX79

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_205413.1: Suppressed sequence

      Description
      NM_205413.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.