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    LOC123411279 probable mixed-linked glucan synthase 6 [ Hordeum vulgare subsp. vulgare (domesticated barley) ]

    Gene ID: 123411279, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC123411279
    Gene description
    probable mixed-linked glucan synthase 6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hordeum vulgare subsp. vulgare (sub-species: vulgare)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
    Also known as
    HvCslF6
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    Genomic context

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    See LOC123411279 in Genome Data Viewer
    Location:
    chromosome: 7H
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current MorexV3_pseudomolecules_assembly (GCF_904849725.1) 7H NC_058524.1 (366737823..366743747, complement)

    Chromosome 7H - NC_058524.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC123410354 Neighboring gene alpha/beta hydrolase domain-containing protein 17C-like Neighboring gene small nucleolar RNA Z247 Neighboring gene uncharacterized LOC123413011

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058524.1 Chromosome 7H Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries. Matsumoto T, et al. Plant Physiol, 2011 May. PMID 21415278, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mannan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable mixed-linked glucan synthase 6
    Names
    cellulose synthase-like CslF6
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hordeum vulgare subsp. vulgare Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Genomic

    1. NC_058524.1 Reference MorexV3_pseudomolecules_assembly Primary Assembly

      Range
      366737823..366743747 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045104211.1 → XP_044960146.1  probable mixed-linked glucan synthase 6

      UniProtKB/TrEMBL
      B1P2T4, F2DMH9, H1ACH0, H1ACI3
      Conserved Domains (1) summary
      PLN02248
      Location:77 → 916
      PLN02248; cellulose synthase-like protein
    Nucleotide Protein
    Heading Accession and Version

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