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    LOC102630390 chromatin structure-remodeling complex protein BSH [ Citrus sinensis (sweet orange) ]

    Gene ID: 102630390, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC102630390
    Gene description
    chromatin structure-remodeling complex protein BSH
    Locus tag
    KPL70_002224
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Citrus sinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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    Genomic context

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    See LOC102630390 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current DVS_A1.0 (GCF_022201045.2) 1 NC_068556.1 (24819244..24822118, complement)
    102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 9 NC_023054.1 (26966..29837)

    Chromosome 1 - NC_068556.1Genomic Context describing neighboring genes Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene hypothetical protein Neighboring gene auxin-responsive protein IAA31-like Neighboring gene uncharacterized LOC102630089

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Zeng L, et al. Nat Commun, 2014 Sep 24. PMID 25249442, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromatin structure-remodeling complex protein BSH
    Names
    bushy growth protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DVS_A1.0 Primary Assembly

    Genomic

    1. NC_068556.1 Reference DVS_A1.0 Primary Assembly

      Range
      24819244..24822118 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006488638.4 → XP_006488701.1  chromatin structure-remodeling complex protein BSH

      See identical proteins and their annotated locations for XP_006488701.1

      UniProtKB/TrEMBL
      A0A067FY42, A0A067G9T9
      Conserved Domains (1) summary
      pfam04855
      Location:21 → 157
      SNF5; SNF5 / SMARCB1 / INI1
    Nucleotide Protein
    Heading Accession and Version

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