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    LOC100216623 uncharacterized LOC100216623 [ Zea mays ]

    Gene ID: 100216623, updated on 12-May-2024

    Summary

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    Gene symbol
    LOC100216623
    Gene description
    uncharacterized LOC100216623
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    gpm417; GRMZM2G015361
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    Genomic context

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    See LOC100216623 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (4559605..4563457)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (4446916..4450473)

    Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103634673 Neighboring gene uncharacterized LOC100381878 Neighboring gene tubulin beta pseudogene Neighboring gene Gb protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ADP-ribosylation factor 2; uncharacterized protein LOC100216623
    Names
    ADP-ribosylation factor A1B
    PCO139069
    PCO139069(582)
    gnp_QAY2h02
    NP_001136508.1
    XP_008654461.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001143036.1 → NP_001136508.1  ADP-ribosylation factor 2

      See identical proteins and their annotated locations for NP_001136508.1

      Status: PROVISIONAL

      Source sequence(s)
      BT037066
      UniProtKB/Swiss-Prot
      P49076
      UniProtKB/TrEMBL
      B4FIX8
      Conserved Domains (1) summary
      PLN00223
      Location:1 → 181
      PLN00223; ADP-ribosylation factor; Provisional

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      4559605..4563457
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008656239.4 → XP_008654461.1  uncharacterized protein LOC100216623 isoform X1

      See identical proteins and their annotated locations for XP_008654461.1

      UniProtKB/Swiss-Prot
      P49076
      UniProtKB/TrEMBL
      B4FIX8
      Conserved Domains (1) summary
      PLN00223
      Location:1 → 181
      PLN00223; ADP-ribosylation factor; Provisional
    Nucleotide Protein
    Heading Accession and Version

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