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    LOC542395 Alpha-tubulin 3 [ Zea mays ]

    Gene ID: 542395, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542395
    Gene description
    Alpha-tubulin 3
    Locus tag
    ZEAMMB73_Zm00001d013159
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    tua3; TUBA3
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    Genomic context

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    See LOC542395 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (5741402..5744142, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (5560397..5563137, complement)

    Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene NADH-ubiquinone oxidoreductase 23 kDa subunit Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 Neighboring gene Formin-like protein 18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Tub alpha 3 gene from Zea mays: structure and expression in dividing plant tissues. Montoliu L, et al. Gene, 1990 Oct 15. PMID 1701749
    2. Alpha-tubulin gene family of maize (Zea mays L.). Evidence for two ancient alpha-tubulin genes in plants. Villemur R, et al. J Mol Biol, 1992 Sep 5. PMID 1522603
    3. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
    4. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    5. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • AC195340.3_FG001

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubulin alpha-3 chain
    Names
    AC195340.3_FGT001
    alpha tubulin1
    alpha tubulin3
    alpha-3-tubulin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111970.1 → NP_001105440.1  tubulin alpha-3 chain

      See identical proteins and their annotated locations for NP_001105440.1

      Status: PROVISIONAL

      Source sequence(s)
      X63176
      UniProtKB/Swiss-Prot
      P22275
      UniProtKB/TrEMBL
      A0A3L6ETU7, A0A804P7M1, A0A8J8Y3Q5, C4JBJ2
      Conserved Domains (1) summary
      PLN00221
      Location:1 → 450
      PLN00221; tubulin alpha chain; Provisional

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      5741402..5744142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P22275.1 GenPept UniProtKB/Swiss-Prot:P22275

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