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    eri1 exoribonuclease 1 [ Alosa alosa (allis shad) ]

    Gene ID: 125305168, updated on 22-Mar-2024

    Summary

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    Gene symbol
    eri1
    Gene description
    exoribonuclease 1
    Locus tag
    AALO_G00164720
    See related
    EnsemblRapid:ENSAAOG00005006131
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alosa alosa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa
    Orthologs
    human zebrafish all
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    Genomic context

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    See eri1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current AALO_Geno_1.1 (GCF_017589495.1) 12 NC_063200.1 (15384778..15396374)

    Chromosome 12 - NC_063200.1Genomic Context describing neighboring genes Neighboring gene germ cell-less, spermatogenesis associated Neighboring gene uncharacterized LOC125304139 Neighboring gene multifunctional ROCO family signaling regulator 1 Neighboring gene small nucleolar RNA SNORD58 Neighboring gene ribosomal protein L17

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_063200.1 Chromosome 12 Reference AALO_Geno_1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5'-RNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3'-5' exoribonuclease 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Alosa alosa Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AALO_Geno_1.1 Primary Assembly

    Genomic

    1. NC_063200.1 Reference AALO_Geno_1.1 Primary Assembly

      Range
      15384778..15396374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_048259801.1 → XP_048115758.1  3'-5' exoribonuclease 1 isoform X1

      Related
      ENSAAOP00005011667.1, ENSAAOT00005012742.1

    2. XM_048259802.1 → XP_048115759.1  3'-5' exoribonuclease 1 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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