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    pla2g4ab phospholipase A2, group IVAb (cytosolic, calcium-dependent) [ Alosa alosa (allis shad) ]

    Gene ID: 125301287, updated on 22-Mar-2024

    Summary

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    Gene symbol
    pla2g4ab
    Gene description
    phospholipase A2, group IVAb (cytosolic, calcium-dependent)
    Locus tag
    AALO_G00130130
    See related
    EnsemblRapid:ENSAAOG00005018176
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alosa alosa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa
    Orthologs
    zebrafish all
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    Genomic context

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    See pla2g4ab in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current AALO_Geno_1.1 (GCF_017589495.1) 9 NC_063197.1 (27899662..27951965, complement)

    Chromosome 9 - NC_063197.1Genomic Context describing neighboring genes Neighboring gene hemicentin 1 Neighboring gene actin related protein 2/3 complex, subunit 5B Neighboring gene prostaglandin-endoperoxide synthase 2b Neighboring gene uncharacterized LOC125300540

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_063197.1 Chromosome 9 Reference AALO_Geno_1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent phospholipase A2 activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycerophospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytosolic phospholipase A2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Alosa alosa Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AALO_Geno_1.1 Primary Assembly

    Genomic

    1. NC_063197.1 Reference AALO_Geno_1.1 Primary Assembly

      Range
      27899662..27951965 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_048253747.1 → XP_048109704.1  cytosolic phospholipase A2

      Related
      ENSAAOP00005035232.1, ENSAAOT00005038452.1
    Nucleotide Protein
    Heading Accession and Version

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