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    CXCR4 C-X-C motif chemokine receptor 4 [ Taeniopygia guttata (zebra finch) ]

    Gene ID: 100229955, updated on 13-Aug-2024

    Summary

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    Gene symbol
    CXCR4
    Gene description
    C-X-C motif chemokine receptor 4
    See related
    Ensembl:ENSTGUG00000011822
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Taeniopygia guttata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
    Orthologs
    human mouse all
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    Genomic context

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    See CXCR4 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current bTaeGut1.4.pri (GCF_003957565.2) 7 NC_044219.2 (31867335..31871170, complement)
    105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 7 NC_045006.1 (32042117..32045464, complement)

    Chromosome 7 - NC_044219.2Genomic Context describing neighboring genes Neighboring gene minichromosome maintenance complex component 6 Neighboring gene aspartyl-tRNA synthetase 1 Neighboring gene thrombospondin type 1 domain containing 7B Neighboring gene carnosine N-methyltransferase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemokine receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cytokine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neurogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C-X-C chemokine receptor type 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bTaeGut1.4.pri Primary Assembly

    Genomic

    1. NC_044219.2 Reference bTaeGut1.4.pri Primary Assembly

      Range
      31867335..31871170 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002198278.5 → XP_002198314.1  C-X-C chemokine receptor type 4

      UniProtKB/TrEMBL
      H0ZNK3
      Related
      ENSTGUP00000012180.2
      Conserved Domains (2) summary
      cd15179
      Location:53 → 327
      7tmA_CXCR4; CXC chemokine receptor type 4, member of the class A family of seven-transmembrane G protein-coupled receptors
      pfam12109
      Location:20 → 52
      CXCR4_N; CXCR4 Chemokine receptor N terminal
    Nucleotide Protein
    Heading Accession and Version

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