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    LOC7464867 brefeldin A-inhibited guanine nucleotide-exchange protein 2 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7464867, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7464867
    Gene description
    brefeldin A-inhibited guanine nucleotide-exchange protein 2
    Locus tag
    POPTR_014G070600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7464867 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 14 NC_037298.2 (4488223..4498291)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 14 NC_037298.1 (5723654..5733688)

    Chromosome 14 - NC_037298.2Genomic Context describing neighboring genes Neighboring gene LOB domain-containing protein 18 Neighboring gene pentatricopeptide repeat-containing protein At1g01970 Neighboring gene probable calcium-binding protein CML23 Neighboring gene AT-hook motif nuclear-localized protein 22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of ARF protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    brefeldin A-inhibited guanine nucleotide-exchange protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037298.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      4488223..4498291
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002320028.4 → XP_002320064.1  brefeldin A-inhibited guanine nucleotide-exchange protein 2

      See identical proteins and their annotated locations for XP_002320064.1

      UniProtKB/TrEMBL
      A0A2K2BJ08, B9IC07
      Conserved Domains (1) summary
      PLN03076
      Location:1 → 1783
      PLN03076; ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
    Nucleotide Protein
    Heading Accession and Version

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