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    LOC100247502 protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [ Vitis vinifera (wine grape) ]

    Gene ID: 100247502, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100247502
    Gene description
    protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
    Locus tag
    VIT_00010747001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100247502 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 5 NC_081809.1 (23765620..23771572)
    102 previous assembly 12X (GCF_000003745.3) 5 NC_012011.3 (22089839..22095762)

    Chromosome 5 - NC_081809.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100257747 Neighboring gene gamma-secretase subunit APH1-like Neighboring gene endonuclease III homolog 1, chloroplastic Neighboring gene uncharacterized LOC104879453 Neighboring gene ATPase family AAA domain-containing protein At1g05910

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CAAX-protein geranylgeranyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein farnesyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein farnesylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein geranylgeranylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CAAX-protein geranylgeranyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of protein farnesyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081809.1 Reference ASM3070453v1 Primary Assembly

      Range
      23765620..23771572
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002264351.5 → XP_002264387.1  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

      See identical proteins and their annotated locations for XP_002264387.1

      UniProtKB/TrEMBL
      A5AXJ9, D7U1N5
      Conserved Domains (2) summary
      PLN02789
      Location:7 → 329
      PLN02789; farnesyltranstransferase
      pfam01239
      Location:133 → 159
      PPTA; Protein prenyltransferase alpha subunit repeat
    Nucleotide Protein
    Heading Accession and Version

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