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    LOC100261806 potassium channel AKT2/3 [ Vitis vinifera (wine grape) ]

    Gene ID: 100261806, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100261806
    Gene description
    potassium channel AKT2/3
    Locus tag
    VIT_00022866001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100261806 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 12 NC_081816.1 (20640870..20647747)
    102 previous assembly 12X (GCF_000003745.3) 12 NC_012018.3 (18663783..18670736)

    Chromosome 12 - NC_081816.1Genomic Context describing neighboring genes Neighboring gene probable receptor-like protein kinase At1g11050 Neighboring gene UDP-glucose:glycoprotein glucosyltransferase Neighboring gene putative disease resistance RPP13-like protein 1 Neighboring gene putative disease resistance protein At3g14460 Neighboring gene exocyst complex component SEC6 Neighboring gene putative disease resistance RPP13-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables voltage-gated potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    potassium channel AKT2/3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081816.1 Reference ASM3070453v1 Primary Assembly

      Range
      20640870..20647747
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002268888.4 → XP_002268924.1  potassium channel AKT2/3 isoform X1

      UniProtKB/TrEMBL
      F6H931
      Conserved Domains (6) summary
      PLN03192
      Location:20 → 841
      PLN03192; Voltage-dependent potassium channel; Provisional
      cd00038
      Location:400 → 513
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      cd00204
      Location:571 → 694
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam07885
      Location:270 → 324
      Ion_trans_2; Ion channel
      pfam11834
      Location:761 → 833
      KHA; KHA, dimerization domain of potassium ion channel
      sd00045
      Location:577 → 607
      ANK; ANK repeat [structural motif]

    2. XM_019223688.2 → XP_019079233.1  potassium channel AKT2/3 isoform X2

      UniProtKB/TrEMBL
      F6H931
    Nucleotide Protein
    Heading Accession and Version

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