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    Dtna dystrobrevin alpha [ Marmota marmota marmota (Alpine marmot) ]

    Gene ID: 107139550, updated on 1-Aug-2024

    Summary

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    Gene symbol
    Dtna
    Gene description
    dystrobrevin alpha
    See related
    Ensembl:ENSMMMG00000007833
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Marmota marmota marmota (sub-species: marmota)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
    Orthologs
    human mouse all
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    Genomic context

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    See Dtna in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_025999990.1 (30884065..31199745, complement)
    100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351220.1 (30884982..31137530, complement)

    NW_025999990.1Genomic Context describing neighboring genes Neighboring gene microtubule associated protein RP/EB family member 2 Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene uncharacterized LOC125617741 Neighboring gene nucleolar protein 4 Neighboring gene ASXL transcriptional regulator 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in synaptic signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dystrobrevin alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference marMar

    Genomic

    1. NW_025999990.1 Reference marMar

      Range
      30884065..31199745 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_048806343.1 → XP_048662300.1  dystrobrevin alpha isoform X1

      UniProtKB/TrEMBL
      A0AAJ8DA74

    2. XM_048806342.1 → XP_048662299.1  dystrobrevin alpha isoform X1

      UniProtKB/TrEMBL
      A0AAJ8DA74

    3. XM_048806340.1 → XP_048662297.1  dystrobrevin alpha isoform X1

      UniProtKB/TrEMBL
      A0AAJ8DA74

    4. XM_048806347.1 → XP_048662304.1  dystrobrevin alpha isoform X3

      UniProtKB/TrEMBL
      A0AAJ8ABJ5

    5. XM_048806346.1 → XP_048662303.1  dystrobrevin alpha isoform X2

      UniProtKB/TrEMBL
      A0AAJ8DAA2

    6. XM_048806348.1 → XP_048662305.1  dystrobrevin alpha isoform X4

      UniProtKB/TrEMBL
      A0AAJ8ABF6

    7. XM_048806351.1 → XP_048662308.1  dystrobrevin alpha isoform X6

      UniProtKB/TrEMBL
      A0AAJ8ABF9

    8. XM_048806349.1 → XP_048662306.1  dystrobrevin alpha isoform X5

      UniProtKB/TrEMBL
      A0AAJ8ACV7

    9. XM_048806353.1 → XP_048662310.1  dystrobrevin alpha isoform X7

      UniProtKB/TrEMBL
      A0AAJ8ABW0

    10. XM_048806356.1 → XP_048662313.1  dystrobrevin alpha isoform X10

      UniProtKB/TrEMBL
      A0AAJ8AC37

    11. XM_048806354.1 → XP_048662311.1  dystrobrevin alpha isoform X8

      UniProtKB/TrEMBL
      A0AAJ8ACZ7

    12. XM_048806355.1 → XP_048662312.1  dystrobrevin alpha isoform X9

      UniProtKB/TrEMBL
      A0AAJ8ACZ9

    13. XM_048806359.1 → XP_048662316.1  dystrobrevin alpha isoform X14

      UniProtKB/TrEMBL
      A0AAJ8D9Z3

    14. XM_015482445.2 → XP_015337931.1  dystrobrevin alpha isoform X25

      UniProtKB/TrEMBL
      A0AAJ7AFM2
      Conserved Domains (4) summary
      cd02334
      Location:241 → 289
      ZZ_dystrophin; Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane ...
      pfam09068
      Location:16 → 140
      EF-hand_2; EF hand
      pfam09069
      Location:144 → 232
      EF-hand_3; EF-hand
      pfam13874
      Location:467 → 550
      Nup54; Nucleoporin complex subunit 54

    15. XM_048806357.1 → XP_048662314.1  dystrobrevin alpha isoform X11

      UniProtKB/TrEMBL
      A0AAJ8D9Y1

    16. XM_015482449.2 → XP_015337935.1  dystrobrevin alpha isoform X12

      UniProtKB/TrEMBL
      A0AAJ7AF86
      Conserved Domains (4) summary
      cd02334
      Location:241 → 289
      ZZ_dystrophin; Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane ...
      pfam09068
      Location:16 → 140
      EF-hand_2; EF hand
      pfam09069
      Location:144 → 232
      EF-hand_3; EF-hand
      pfam13874
      Location:410 → 493
      Nup54; Nucleoporin complex subunit 54

    17. XM_048806358.1 → XP_048662315.1  dystrobrevin alpha isoform X13

      UniProtKB/TrEMBL
      A0AAJ8DA79

    18. XM_048806360.1 → XP_048662317.1  dystrobrevin alpha isoform X15

      UniProtKB/TrEMBL
      A0AAJ8DA98

    19. XM_015482447.2 → XP_015337933.1  dystrobrevin alpha isoform X16

      UniProtKB/TrEMBL
      A0A8C5Z4Z6
      Related
      ENSMMMP00000008913.1
      Conserved Domains (4) summary
      COG0419
      Location:365 → 494
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd02334
      Location:241 → 289
      ZZ_dystrophin; Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane ...
      cd16249
      Location:54 → 214
      EFh_DTNA; EF-hand-like motif found in alpha-dystrobrevin
      cl39057
      Location:408 → 598
      MS_channel; Mechanosensitive ion channel

    20. XM_048806345.1 → XP_048662302.1  dystrobrevin alpha isoform X1

      UniProtKB/TrEMBL
      A0AAJ8DA74

    21. XM_048806344.1 → XP_048662301.1  dystrobrevin alpha isoform X1

      UniProtKB/TrEMBL
      A0AAJ8DA74

    22. XM_048806350.1 → XP_048662307.1  dystrobrevin alpha isoform X5

      UniProtKB/TrEMBL
      A0AAJ8ACV7

    23. XM_048806361.1 → XP_048662318.1  dystrobrevin alpha isoform X16

      UniProtKB/TrEMBL
      A0A8C5Z4Z6

    24. XM_048806352.1 → XP_048662309.1  dystrobrevin alpha isoform X6

      UniProtKB/TrEMBL
      A0AAJ8ABF9

    25. XM_048806362.1 → XP_048662319.1  dystrobrevin alpha isoform X17

      UniProtKB/TrEMBL
      A0AAJ8ABK5

    26. XM_048806363.1 → XP_048662320.1  dystrobrevin alpha isoform X18

      UniProtKB/TrEMBL
      A0AAJ8ABG5

    27. XM_048806364.1 → XP_048662321.1  dystrobrevin alpha isoform X19

      UniProtKB/TrEMBL
      A0AAJ8ABH0

    28. XM_048806367.1 → XP_048662324.1  dystrobrevin alpha isoform X20

      UniProtKB/TrEMBL
      A0AAJ8AC80

    29. XM_048806368.1 → XP_048662325.1  dystrobrevin alpha isoform X21

      UniProtKB/TrEMBL
      A0AAJ8ABX0

    30. XM_048806370.1 → XP_048662327.1  dystrobrevin alpha isoform X22

      UniProtKB/TrEMBL
      A0AAJ8AC47

    31. XM_048806366.1 → XP_048662323.1  dystrobrevin alpha isoform X19

      UniProtKB/TrEMBL
      A0AAJ8ABH0

    32. XM_048806371.1 → XP_048662328.1  dystrobrevin alpha isoform X22

      UniProtKB/TrEMBL
      A0AAJ8AC47

    33. XM_048806369.1 → XP_048662326.1  dystrobrevin alpha isoform X21

      UniProtKB/TrEMBL
      A0AAJ8ABX0

    34. XM_048806372.1 → XP_048662329.1  dystrobrevin alpha isoform X23

      UniProtKB/TrEMBL
      A0AAJ8D9Y5

    35. XM_015482448.2 → XP_015337934.1  dystrobrevin alpha isoform X24

      UniProtKB/TrEMBL
      A0A8C5Z3E9
      Related
      ENSMMMP00000008927.1
      Conserved Domains (2) summary
      cd02334
      Location:241 → 289
      ZZ_dystrophin; Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane ...
      cd16249
      Location:54 → 214
      EFh_DTNA; EF-hand-like motif found in alpha-dystrobrevin

    36. XM_048806373.1 → XP_048662330.1  dystrobrevin alpha isoform X23

      UniProtKB/TrEMBL
      A0AAJ8D9Y5

    37. XM_048806374.1 → XP_048662331.1  dystrobrevin alpha isoform X24

      UniProtKB/TrEMBL
      A0A8C5Z3E9
    Nucleotide Protein
    Heading Accession and Version

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