U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC104103346 xanthotoxin 5-hydroxylase CYP82C4 [ Nicotiana tomentosiformis ]

    Gene ID: 104103346, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC104103346
    Gene description
    xanthotoxin 5-hydroxylase CYP82C4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nicotiana tomentosiformis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
    Also known as
    NND; CYP82E3
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC104103346 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current Ntom_v01 (GCF_000390325.2) Unplaced Scaffold NW_008892935.1 (39451..42900)

    NW_008892935.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117278525 Neighboring gene xanthotoxin 5-hydroxylase CYP82C4

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_008892935 Unplaced Scaffold Reference Ntom_v01 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    xanthotoxin 5-hydroxylase CYP82C4
    Names
    Cytochrome P450 82E3
    Nicotine N-demethylase CYP82E3
    NtomCYP82E3
    cytochrome P450 82C4
    cytochrome P450 monooxygenase CYP82E3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Nicotiana tomentosiformis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ntom_v01 Primary Assembly

    Genomic

    1. NW_008892935.1 Reference Ntom_v01 Primary Assembly

      Range
      39451..42900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009611242.3 → XP_009609537.1  xanthotoxin 5-hydroxylase CYP82C4

      See identical proteins and their annotated locations for XP_009609537.1

      UniProtKB/Swiss-Prot
      A1YJE2
      Conserved Domains (1) summary
      cl12078
      Location:1 → 518
      p450; Cytochrome P450
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1YJE2.1 GenPept UniProtKB/Swiss-Prot:A1YJE2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases