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    TGME49_258030 DNA polymerase [ Toxoplasma gondii ME49 ]

    Gene ID: 7901086, updated on 26-Oct-2024

    Summary

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    Gene symbol
    TGME49_258030
    Gene description
    DNA polymerase
    Locus tag
    TGME49_258030
    See related
    ToxoDB:TGME49_258030; VEuPathDB:TGME49_258030
    Gene type
    protein coding
    RNA name
    DNA polymerase
    RefSeq status
    PROVISIONAL
    Organism
    Toxoplasma gondii ME49 (strain: ME49)
    Lineage
    Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Sarcocystidae; Toxoplasma
    Old locus tag
    TGME49_058030
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: VIIb
    Exon count:
    21
    Sequence:
    Chromosome: VIIb; NC_031475.1 (3625430..3639861, complement)

    Chromosome VIIb - NC_031475.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene actin like protein ALP2a Neighboring gene hypothetical protein Neighboring gene calcium signaling protein kinase RAD53, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_031475.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5'-DNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication proofreading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA-templated DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in base-excision repair, gap-filling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleotide-excision repair, DNA gap filling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of delta DNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    DNA polymerase
    XP_002365027.1
    • encoded by transcript TGME49_258030

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_031475.1 Reference assembly

      Range
      3625430..3639861 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002364986.2 → XP_002365027.1  DNA polymerase [Toxoplasma gondii ME49]

      See identical proteins and their annotated locations for XP_002365027.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0N5ECR0, A0A125YP50, A0A7J6K1S4, B6KB43, B9QBN3, S7UYK5, S8F734
      Conserved Domains (4) summary
      cd05777
      Location:438 → 683
      DNA_polB_delta_exo; DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase
      PTZ00166
      Location:59 → 1258
      PTZ00166; DNA polymerase delta catalytic subunit; Provisional
      cl10023
      Location:749 → 1141
      POLBc; DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic ...
      pfam14260
      Location:1176 → 1245
      zf-C4pol; C4-type zinc-finger of DNA polymerase delta
    Nucleotide Protein
    Heading Accession and Version

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