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    PAS_chr4_0020 Component of the spliceosome complex involved in pre-mRNA splicing [ Komagataella phaffii GS115 ]

    Gene ID: 8200543, updated on 23-Nov-2023

    Summary

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    Gene symbol
    PAS_chr4_0020
    Gene description
    Component of the spliceosome complex involved in pre-mRNA splicing
    Locus tag
    PAS_chr4_0020
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Komagataella phaffii GS115 (strain: GS115)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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    Genomic context

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    See PAS_chr4_0020 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_012966.1 (45327..46088, complement)

    Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Hypothetical protein Neighboring gene Cytochrome c Neighboring gene Component of the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p) Neighboring gene Guanosine diphosphatase located in the Golgi Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012966.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in generation of catalytic spliceosome for second transesterification step IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA 3'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Prp19 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of post-mRNA release spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of post-spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Component of the spliceosome complex involved in pre-mRNA splicing

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012966.1 Reference assembly

      Range
      45327..46088 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002493380.1 → XP_002493425.1  Component of the spliceosome complex involved in pre-mRNA splicing [Komagataella phaffii GS115]

      See identical proteins and their annotated locations for XP_002493425.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      C4R6M1, F2R0H0
      Conserved Domains (1) summary
      pfam06246
      Location:1 → 251
      Isy1; Isy1-like splicing family
    Nucleotide Protein
    Heading Accession and Version

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