U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    Phf5a PHD finger protein 5a [ Acyrthosiphon pisum (pea aphid) ]

    Gene ID: 100168643, updated on 23-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Phf5a
    Gene description
    PHD finger protein 5a
    See related
    APHIDBASE:ACYPI009324; EnsemblRapid:LOC100168643
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Acyrthosiphon pisum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
    Orthologs
    fruit fly all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Phf5a in Genome Data Viewer
    Location:
    chromosome: A3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A3 NC_042496.1 (14120458..14121775)
    102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003383760.1 (75723..77040, complement)

    Chromosome A3 - NC_042496.1Genomic Context describing neighboring genes Neighboring gene glycine receptor subunit alphaZ1-like Neighboring gene hormone receptor 4 Neighboring gene autism susceptibility gene 2 protein Neighboring gene Ionotropic receptor 68a Neighboring gene CD151 antigen-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U12-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    PHD finger protein 5a

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162825.1 → NP_001156297.1  PHD finger protein 5a

      See identical proteins and their annotated locations for NP_001156297.1

      Status: PROVISIONAL

      Source sequence(s)
      AK342538
      UniProtKB/TrEMBL
      C4WXB0
      Related
      NP_001156297.1, NM_001162825.1
      Conserved Domains (1) summary
      pfam03660
      Location:1 → 104
      PHF5; PHF5-like protein

    RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Genomic

    1. NC_042496.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

      Range
      14120458..14121775
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.