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    LOC128691123 U6 snRNA-associated Sm-like protein LSm2 [ Cherax quadricarinatus ]

    Gene ID: 128691123, updated on 1-Jul-2024

    Summary

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    Gene symbol
    LOC128691123
    Gene description
    U6 snRNA-associated Sm-like protein LSm2
    See related
    EnsemblRapid:LOC128691123
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cherax quadricarinatus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Parastacoidea; Parastacidae; Cherax
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC128691123 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_01 current ASM2687515v2 (GCF_026875155.1) 28 NC_069426.1 (36335261..36341320, complement)

    Chromosome 28 - NC_069426.1Genomic Context describing neighboring genes Neighboring gene protein serrate Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene zinc finger X-linked protein ZXDA-like Neighboring gene venom phosphodiesterase-like Neighboring gene chromodomain-helicase-DNA-binding protein Mi-2 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_069426.1 Chromosome 28 Reference ASM2687515v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U6 snRNA-associated Sm-like protein LSm2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_026875155.1-RS_2023_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2687515v2 Primary Assembly

    Genomic

    1. NC_069426.1 Reference ASM2687515v2 Primary Assembly

      Range
      36335261..36341320 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_053779931.1 → XP_053635906.1  U6 snRNA-associated Sm-like protein LSm2

      Related
      XP_053635906.1, XM_053779931.1
    Nucleotide Protein
    Heading Accession and Version

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