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    LOC4331776 transcription factor ILI6-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331776, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4331776
    Gene description
    transcription factor ILI6-like
    Locus tag
    OSNPB_030171300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ILI6; PGL1; OsILI6; OsJ_09588
    Expression
    Biased expression in flowers (RPKM 2.4), flower buds (RPKM 1.8) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3814350..3823284, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At5g39865 Neighboring gene sucrose transport protein SUT1 Neighboring gene F-box/kelch-repeat protein At1g74510 Neighboring gene transcription factor ILI3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A rice dual-localized pentatricopeptide repeat protein is involved in organellar RNA editing together with OsMORFs. Xiao H, et al. J Exp Bot, 2018 May 25. PMID 29562289, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of growth IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor ILI6
    Names
    LOC_Os03g07510
    Protein INCREASED LEAF INCLINATION 6
    Protein POSITIVE REGULATOR OF GRAIN LENGTH 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417233.1 → NP_001404162.1  transcription factor ILI6 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CI534626, CI752185

    2. NM_001417234.1 → NP_001404163.1  transcription factor ILI6 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CI209393, CI534626, CI752185

    3. NM_001417235.1 → NP_001404164.1  transcription factor ILI6 isoform 3

      Status: VALIDATED

      Source sequence(s)
      CI342782, JG458751
      UniProtKB/Swiss-Prot
      A0A0P0VTW3, B8APB5, Q0DUR2, Q10R49

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      3814350..3823284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026023691.1 → XP_025879476.1  transcription factor ILI6 isoform X2

      Conserved Domains (1) summary
      PLN03217
      Location:97 → 156
      PLN03217; transcription factor ATBS1; Provisional

    2. XM_026023690.1 → XP_025879475.1  transcription factor ILI6 isoform X1

      Conserved Domains (1) summary
      PLN03217
      Location:100 → 159
      PLN03217; transcription factor ATBS1; Provisional

    3. XM_015774434.2 → XP_015629920.1  transcription factor ILI6 isoform X5

      Conserved Domains (1) summary
      PLN03217
      Location:67 → 126
      PLN03217; transcription factor ATBS1; Provisional

    4. XM_015774433.2 → XP_015629919.1  transcription factor ILI6 isoform X4

      Conserved Domains (1) summary
      PLN03217
      Location:70 → 129
      PLN03217; transcription factor ATBS1; Provisional

    5. XM_015774435.2 → XP_015629921.1  transcription factor ILI6 isoform X6

      Conserved Domains (1) summary
      PLN03217
      Location:41 → 100
      PLN03217; transcription factor ATBS1; Provisional

    6. XM_026023692.1 → XP_025879477.1  transcription factor ILI6 isoform X3

      Conserved Domains (1) summary
      PLN03217
      Location:71 → 130
      PLN03217; transcription factor ATBS1; Provisional

    7. XM_015774436.2 → XP_015629922.1  transcription factor ILI6 isoform X7

      UniProtKB/Swiss-Prot
      Q0DUR2
      Conserved Domains (1) summary
      PLN03217
      Location:16 → 91
      PLN03217; transcription factor ATBS1; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DUR2.1 GenPept UniProtKB/Swiss-Prot:Q0DUR2

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