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    LOC101220615 glutamyl-tRNA reductase 1, chloroplastic-like [ Cucumis sativus (cucumber) ]

    Gene ID: 101220615, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101220615
    Gene description
    glutamyl-tRNA reductase 1, chloroplastic-like
    Locus tag
    Csa_021845
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
    Also known as
    hemA; GluTR; HEMA1
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    Genomic context

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    See LOC101220615 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 2 NC_026656.2 (20067031..20069818, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 2 NC_026656.1 (18513294..18516081, complement)

    Chromosome 2 - NC_026656.2Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein IAA9-like Neighboring gene E3 ubiquitin-protein ligase WAV3 Neighboring gene protein DETOXIFICATION 48 Neighboring gene sucrose transport protein SUC4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential expression of two hemA mRNAs encoding glutamyl-tRNA reductase proteins in greening cucumber seedlings. Tanaka R, et al. Plant Physiol, 1996 Apr. PMID 8934625, Free PMC Article
    2. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. Li Z, et al. BMC Genomics, 2011 Nov 2. PMID 22047402, Free PMC Article
    3. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. Guo S, et al. BMC Genomics, 2010 Jun 17. PMID 20565788, Free PMC Article
    4. The genome of the cucumber, Cucumis sativus L. Huang S, et al. Nat Genet, 2009 Dec. PMID 19881527
    5. An integrated genetic and cytogenetic map of the cucumber genome. Ren Y, et al. PLoS One, 2009 Jun 4. PMID 19495411, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glutamyl-tRNA reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tetrapyrrole biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutamyl-tRNA reductase 1, chloroplastic
    Names
    Glutamyl-tRNA reductase 1, chloroplastic
    glutamyl-tRNA reductase isozyme 1
    NP_001267503.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001280574.1 → NP_001267503.1  glutamyl-tRNA reductase 1, chloroplastic

      See identical proteins and their annotated locations for NP_001267503.1

      Status: PROVISIONAL

      Source sequence(s)
      D50407
      UniProtKB/Swiss-Prot
      P93111
      UniProtKB/TrEMBL
      A0A0A0LP19
      Conserved Domains (1) summary
      PLN00203
      Location:40 → 538
      PLN00203; glutamyl-tRNA reductase

    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026656.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      20067031..20069818 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P93111.1 GenPept UniProtKB/Swiss-Prot:P93111

    Gene LinkOut

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