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    LOC125487216 TNFSF7/9-like [ Rhincodon typus (whale shark) ]

    Gene ID: 125487216, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC125487216
    Gene description
    TNFSF7/9-like
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rhincodon typus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon
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    Genomic context

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    See LOC125487216 in Genome Data Viewer
    Location:
    chromosome: 38
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current sRhiTyp1.1 (GCF_021869965.1) 38 NC_063369.1 (240035..247301)

    Chromosome 38 - NC_063369.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125487243 Neighboring gene tartrate-resistant acid phosphatase type 5-like Neighboring gene outer dynein arm docking complex subunit 3 Neighboring gene tumor necrosis factor ligand superfamily member 14 Neighboring gene transmembrane emp24 domain-containing protein 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_063369.1 Chromosome 38 Reference sRhiTyp1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sharks Provide Evidence for a Highly Complex TNFSF Repertoire in the Jawed Vertebrate Ancestor. Redmond AK, et al. J Immunol, 2022 Nov 1. PMID 36113883
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tumor necrosis factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TNFSF7/9-like; uncharacterized protein LOC125487216

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422491.1 → NP_001409420.1  TNFSF7/9-like

      Status: VALIDATED

      Source sequence(s)
      JAHMAH010000038

    RefSeqs of Annotated Genomes: Rhincodon typus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sRhiTyp1.1

    Genomic

    1. NC_063369.1 Reference sRhiTyp1.1

      Range
      240035..247301
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_048617758.1 → XP_048473715.1  uncharacterized protein LOC125487216

    2. XM_048617760.1 → XP_048473717.1  uncharacterized protein LOC125487216

    3. XM_048617759.1 → XP_048473716.1  uncharacterized protein LOC125487216

    4. XM_048617757.1 → XP_048473714.1  uncharacterized protein LOC125487216

    Nucleotide Protein
    Heading Accession and Version

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