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    PHF20 PHD finger protein 20 [ Dasypus novemcinctus (nine-banded armadillo) ]

    Gene ID: 101445978, updated on 8-Mar-2024

    Summary

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    Gene symbol
    PHF20
    Gene description
    PHD finger protein 20
    See related
    Ensembl:ENSDNOG00000007549
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dasypus novemcinctus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Cingulata; Dasypodidae; Dasypus
    Orthologs
    human mouse all
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    Genomic context

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    See PHF20 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_07 current mDasNov1.hap2 (GCF_030445035.1) 24 NC_080696.1 (39015394..39183538)
    102 previous assembly Dasnov3.0 (GCF_000208655.1) Unplaced Scaffold NW_004500486.1 (29542..198485, complement)

    Chromosome 24 - NC_080696.1Genomic Context describing neighboring genes Neighboring gene NFS1 cysteine desulfurase Neighboring gene serine/threonine/tyrosine-interacting protein-like Neighboring gene reactive oxygen species modulator 1 Neighboring gene RNA binding motif protein 39 Neighboring gene transcription initiation protein SPT3 homolog Neighboring gene SCAN domain containing 1 Neighboring gene cyclic nucleotide binding domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MLL1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of NSL complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030445035.1-RS_2023_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mDasNov1.hap2

    Genomic

    1. NC_080696.1 Reference mDasNov1.hap2

      Range
      39015394..39183538
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_058286991.1 → XP_058142974.1  PHD finger protein 20 isoform X7

    2. XM_004482410.4 → XP_004482467.1  PHD finger protein 20 isoform X1

      See identical proteins and their annotated locations for XP_004482467.1

      Conserved Domains (4) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15634
      Location:656 → 699
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam12618
      Location:175 → 258
      DUF3776; Protein of unknown function (DUF3776)
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    3. XM_012521156.3 → XP_012376610.1  PHD finger protein 20 isoform X2

      Conserved Domains (4) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15634
      Location:655 → 698
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam12618
      Location:175 → 258
      DUF3776; Protein of unknown function (DUF3776)
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    4. XM_058286989.1 → XP_058142972.1  PHD finger protein 20 isoform X5

    5. XM_058286990.1 → XP_058142973.1  PHD finger protein 20 isoform X6

    6. XM_058286987.1 → XP_058142970.1  PHD finger protein 20 isoform X3

    7. XM_058286988.1 → XP_058142971.1  PHD finger protein 20 isoform X4

    8. XM_058286992.1 → XP_058142975.1  PHD finger protein 20 isoform X8

    9. XM_058286994.1 → XP_058142977.1  PHD finger protein 20 isoform X9

    10. XM_058286985.1 → XP_058142968.1  PHD finger protein 20 isoform X1

    11. XM_058286993.1 → XP_058142976.1  PHD finger protein 20 isoform X8

    12. XM_058286986.1 → XP_058142969.1  PHD finger protein 20 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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