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    MICPUN_91006 transcription elongation-nucleosome displacement protein [ Micromonas commoda ]

    Gene ID: 8244445, updated on 16-Nov-2023

    Summary

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    Gene symbol
    MICPUN_91006
    Gene description
    transcription elongation-nucleosome displacement protein
    Locus tag
    MICPUN_91006
    Gene type
    protein coding
    RNA name
    transcription elongation-nucleosome displacement protein
    RefSeq status
    PROVISIONAL
    Organism
    Micromonas commoda (strain: RCC299)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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    Genomic context

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    See MICPUN_91006 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Sequence:
    Chromosome: 6; NC_013043.1 (332397..333909)

    Chromosome 6 - NC_013043.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene Solute:Sodium symporter family Neighboring gene photosystem II PsbY protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013043.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Worden AZ, et al. Science, 2009 Apr 10. PMID 19359590
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    transcription elongation-nucleosome displacement protein
    XP_002502800.1
    • Predicted protein with similarity to the TATA-binding protein of Saccharomyces cerevisiae SPT15, a general transcription factor that interacts with other factors to form the preinitiation complex at promoters. ChromDB ID: GTF20101; TBP homolog

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013043.1 Reference assembly

      Range
      332397..333909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002502754.1 → XP_002502800.1  transcription elongation-nucleosome displacement protein [Micromonas commoda]

      See identical proteins and their annotated locations for XP_002502800.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      C1E7Y2
      Conserved Domains (2) summary
      PLN00062
      Location:38 → 216
      PLN00062; TATA-box-binding protein; Provisional
      cd04516
      Location:38 → 211
      TBP_eukaryotes; eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation ...
    Nucleotide Protein
    Heading Accession and Version

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