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    LOC110786512 triosephosphate isomerase, chloroplastic-like [ Spinacia oleracea (spinach) ]

    Gene ID: 110786512, updated on 31-Jan-2024

    Summary

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    Gene symbol
    LOC110786512
    Gene description
    triosephosphate isomerase, chloroplastic-like
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Spinacia oleracea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
    Also known as
    TIM; TPIP1
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    Genomic context

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    See LOC110786512 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_06 current BTI_SOV_V1 (GCF_020520425.1) 4 NC_079490.1 (174192415..174199600, complement)
    100 previous assembly ASM200726v1 (GCF_002007265.1) Unplaced Scaffold NW_018931495.1 (258152..265263, complement)

    Chromosome 4 - NC_079490.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110786485 Neighboring gene uncharacterized LOC110786511 Neighboring gene transcription factor bHLH121-like Neighboring gene transfer RNA lysine (anticodon UUU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chloroplast and cytosolic triosephosphate isomerases from spinach: purification, microsequencing and cDNA cloning of the chloroplast enzyme. Henze K, et al. Plant Mol Biol, 1994 Dec. PMID 7858230

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables triose-phosphate isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gluconeogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glyceraldehyde-3-phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycerol catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    triosephosphate isomerase, chloroplastic
    Names
    Triose-phosphate isomerase
    triosephosphate isomerase, chloroplast isozyme
    XP_021846756.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001426368.1 → NP_001413297.1  triosephosphate isomerase, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      L36387
      UniProtKB/Swiss-Prot
      P48496
      UniProtKB/TrEMBL
      A0A9R0ICH6

    RefSeqs of Annotated Genomes: GCF_020520425.1-RS_2023_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BTI_SOV_V1 Primary Assembly

    Genomic

    1. NC_079490.1 Reference BTI_SOV_V1 Primary Assembly

      Range
      174192415..174199600 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021991064.2 → XP_021846756.1  triosephosphate isomerase, chloroplastic

      Conserved Domains (1) summary
      cl21457
      Location:9 → 322
      ICL_KPHMT; Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P48496.1 GenPept UniProtKB/Swiss-Prot:P48496

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    Molecular Biology Databases