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    LOC105194481 uncharacterized LOC105194481 [ Solenopsis invicta (red fire ant) ]

    Gene ID: 105194481, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC105194481
    Gene description
    uncharacterized LOC105194481
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solenopsis invicta
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis
    Also known as
    PBP; Gp-9
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    Genomic context

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    See LOC105194481 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UNIL_Sinv_3.0 (GCF_016802725.1) 16 NC_052679.1 (19468856..19477399, complement)
    103 previous assembly Si_gnH (GCF_000188075.2) Unplaced Scaffold NW_020521536.1 (424940..426883, complement)

    Chromosome 16 - NC_052679.1Genomic Context describing neighboring genes Neighboring gene tyramine receptor 1 Neighboring gene XPG-like endonuclease Neighboring gene pheromone-binding protein Gp-9 Neighboring gene uncharacterized LOC105194501

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Odorant binding proteins of the red imported fire ant, Solenopsis invicta: an example of the problems facing the analysis of widely divergent proteins. Gotzek D, et al. PLoS One, 2011 Jan 31. PMID 21305009, Free PMC Article
    2. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables odorant binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sensory perception of smell IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in social behavior IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pheromone-binding protein Gp-9
    Names
    OBP4
    Putative odorant-binding protein Gp-9
    general protein-9
    putative odorant binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solenopsis invicta Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UNIL_Sinv_3.0

    Genomic

    1. NC_052679.1 Reference UNIL_Sinv_3.0

      Range
      19468856..19477399 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011159409.3 → XP_011157711.2  pheromone-binding protein Gp-9

      Conserved Domains (1) summary
      smart00708
      Location:37 → 143
      PhBP; Insect pheromone/odorant binding protein domains
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8WP90.1 GenPept UniProtKB/Swiss-Prot:Q8WP90

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