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    Bahcc1 BAH domain and coiled-coil containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360674, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Bahcc1provided by RGD
    Official Full Name
    BAH domain and coiled-coil containing 1provided by RGD
    Primary source
    RGD:1306500
    See related
    EnsemblRapid:ENSRNOG00000043102 AllianceGenome:RGD:1306500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306500
    Summary
    Predicted to enable chromatin binding activity. Predicted to act upstream of or within chromatin organization; locomotory behavior; and neuron differentiation. Orthologous to human BAHCC1 (BAH domain and coiled-coil containing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Adrenal (RPKM 26.1), Kidney (RPKM 18.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Bahcc1 in Genome Data Viewer
    Location:
    10q32.3
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (106020534..106081698)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (105526309..105583320)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (109424306..109482305)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 38, member 10 Neighboring gene uncharacterized LOC100912167 Neighboring gene uncharacterized LOC120095309 Neighboring gene uncharacterized LOC102546528 Neighboring gene actin, gamma 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chromatin organization ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within locomotory behavior ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within neuron differentiation ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    BAH and coiled-coil domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      106020534..106081698
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270200.1 → XP_063126270.1  BAH and coiled-coil domain-containing protein 1 isoform X4

    2. XM_063270201.1 → XP_063126271.1  BAH and coiled-coil domain-containing protein 1 isoform X5

      Related
      ENSRNOP00000101258.1, ENSRNOT00000129994.1

    3. XM_063270199.1 → XP_063126269.1  BAH and coiled-coil domain-containing protein 1 isoform X3

      Related
      ENSRNOP00000103477.1, ENSRNOT00000156896.1

    4. XM_063270197.1 → XP_063126267.1  BAH and coiled-coil domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      D3ZX10
      Related
      ENSRNOP00000063823.4, ENSRNOT00000066736.5

    5. XM_063270198.1 → XP_063126268.1  BAH and coiled-coil domain-containing protein 1 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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