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    Tmem51 transmembrane protein 51 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500578, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Tmem51provided by RGD
    Official Full Name
    transmembrane protein 51provided by RGD
    Primary source
    RGD:1565452
    See related
    EnsemblRapid:ENSRNOG00000014197 AllianceGenome:RGD:1565452
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565452
    Summary
    Orthologous to human TMEM51 (transmembrane protein 51). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 83.0), Spleen (RPKM 27.2) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem51 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (159608865..159658918, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (154325853..154375882, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (160570510..160620647, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120103027 Neighboring gene EF-hand domain family, member D2 Neighboring gene forkhead associated phosphopeptide binding domain 1 Neighboring gene uncharacterized LOC134487032 Neighboring gene kazrin, periplakin interacting protein Neighboring gene uncharacterized LOC134487033

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    transmembrane protein 51

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109273.1 → NP_001102743.1  transmembrane protein 51

      See identical proteins and their annotated locations for NP_001102743.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473968
      UniProtKB/TrEMBL
      A6ITY1, D4AE69
      Related
      ENSRNOP00000019171.3, ENSRNOT00000019171.7
      Conserved Domains (1) summary
      pfam15345
      Location:7 → 236
      TMEM51; Transmembrane protein 51

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      159608865..159658918 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006239314.5 → XP_006239376.1  transmembrane protein 51 isoform X1

      See identical proteins and their annotated locations for XP_006239376.1

      UniProtKB/TrEMBL
      A6ITY1, D4AE69
      Conserved Domains (1) summary
      pfam15345
      Location:7 → 236
      TMEM51; Transmembrane protein 51

    2. XM_063288298.1 → XP_063144368.1  transmembrane protein 51 isoform X1

      UniProtKB/TrEMBL
      A6ITY1, D4AE69

    3. XM_006239313.5 → XP_006239375.1  transmembrane protein 51 isoform X1

      See identical proteins and their annotated locations for XP_006239375.1

      UniProtKB/TrEMBL
      A6ITY1, D4AE69
      Conserved Domains (1) summary
      pfam15345
      Location:7 → 236
      TMEM51; Transmembrane protein 51

    4. XM_006239315.5 → XP_006239377.1  transmembrane protein 51 isoform X1

      See identical proteins and their annotated locations for XP_006239377.1

      UniProtKB/TrEMBL
      A6ITY1, D4AE69
      Conserved Domains (1) summary
      pfam15345
      Location:7 → 236
      TMEM51; Transmembrane protein 51

    5. XM_063288299.1 → XP_063144369.1  transmembrane protein 51 isoform X1

      UniProtKB/TrEMBL
      A6ITY1, D4AE69
    Nucleotide Protein Strain
    Heading Accession and Version

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