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    Pmar_PMAR000559 U6 small nuclear ribonucleoprotein E, putative [ Perkinsus marinus ATCC 50983 ]

    Gene ID: 9047332, updated on 28-Dec-2023

    Summary

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    Gene symbol
    Pmar_PMAR000559
    Gene description
    U6 small nuclear ribonucleoprotein E, putative
    Locus tag
    Pmar_PMAR000559
    See related
    VectorBase:PMAR000559
    Gene type
    protein coding
    RNA name
    U6 small nuclear ribonucleoprotein E, putative
    RefSeq status
    PROVISIONAL
    Organism
    Perkinsus marinus ATCC 50983 (strain: ATCC 50983, culture-collection: ATCC:50983)
    Lineage
    Eukaryota; Alveolata; Perkinsea; Perkinsida; Perkinsidae; Perkinsus
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    Genomic context

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    Exon count:
    4

    NW_003205331.1Genomic Context describing neighboring genes Neighboring gene U1 small nuclear ribonucleoprotein C, putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003205331.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    U6 small nuclear ribonucleoprotein E, putative
    XP_002771506.1
    • encoded by transcript Pmar_PMAR000559-RA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    mRNA and Protein(s)

    1. XM_002771460.1 → XP_002771506.1  U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus ATCC 50983]

      See identical proteins and their annotated locations for XP_002771506.1

      UniProtKB/TrEMBL
      C5LIY7
      Conserved Domains (1) summary
      cd01732
      Location:17 → 93
      LSm5; Like-Sm protein 5
    Nucleotide Protein
    Heading Accession and Version

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