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    DNA binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820401, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA binding protein
    Primary source
    TAIR:AT3G12210
    Locus tag
    AT3G12210
    See related
    Araport:AT3G12210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (3894753..3896567)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene golgin family A protein Neighboring gene NIMA-related kinase 7 Neighboring gene serine carboxypeptidase-like 17 Neighboring gene serine carboxypeptidase-like 16 Neighboring gene serine carboxypeptidase-like 14 Neighboring gene serine carboxypeptidase-like 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Telomerase Interaction Partners-Insight from Plants. Fulnečková J, et al. Int J Mol Sci, 2021 Dec 29. PMID 35008793, Free PMC Article
    2. Tandem affinity purification of AtTERT reveals putative interaction partners of plant telomerase in vivo. Majerská J, et al. Protoplasma, 2017 Jul. PMID 27853871
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112057.3
    NM_180238.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA binding protein
    NP_566413.1
    • DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583); Has 226 Blast hits to 226 proteins in 103 species: Archae - 3; Bacteria - 2; Metazoa - 90; Fungi - 78; Plants - 41; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
    NP_850569.1
    • DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583); Has 220 Blast hits to 220 proteins in 100 species: Archae - 3; Bacteria - 2; Metazoa - 90; Fungi - 77; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3894753..3896567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112057.3 → NP_566413.1  DNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566413.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V712, A0A384LKH6, Q9C7D5

    2. NM_180238.2 → NP_850569.1  DNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850569.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q94K65
    Nucleotide Protein
    Heading Accession and Version

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