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    Bpifb9a BPI fold containing family B, member 9A [ Mus musculus (house mouse) ]

    Gene ID: 71425, updated on 2-Nov-2024

    Summary

    Official Symbol
    Bpifb9aprovided by MGI
    Official Full Name
    BPI fold containing family B, member 9Aprovided by MGI
    Primary source
    MGI:MGI:3767993
    See related
    Ensembl:ENSMUSG00000067998 AllianceGenome:MGI:3767993
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI413838; 4833413D08Rik
    Summary
    Predicted to enable lipid binding activity. Predicted to be involved in sensory perception of smell. Predicted to be located in extracellular region. Orthologous to human BPIFB9P (BPI fold containing family B member 9, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Bpifb9a in Genome Data Viewer
    Location:
    2 H1; 2 76.34 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (154099774..154113165)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (154257879..154271245)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene BPI fold containing family B, member 1 Neighboring gene CDK5 regulatory subunit associated protein 1 Neighboring gene BPI fold containing family B, member 5 Neighboring gene STARR-seq mESC enhancer starr_06113 Neighboring gene STARR-seq mESC enhancer starr_06114 Neighboring gene zinc finger protein 54-like Neighboring gene BPI fold containing family B, member 9B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Clone Names

    • MGC91146, MGC102620

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in sensory perception of smell IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175167.4NP_780376.2  vomeromodulin precursor

      See identical proteins and their annotated locations for NP_780376.2

      Status: VALIDATED

      Source sequence(s)
      AL732601
      Consensus CDS
      CCDS50761.1
      UniProtKB/Swiss-Prot
      A2AJD0, Q5XK13, Q80XI7, Q8CDY1
      Related
      ENSMUSP00000086314.6, ENSMUST00000088924.7

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      154099774..154113165
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)