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    spats2 spermatogenesis associated serine rich 2 [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100692856, updated on 8-Mar-2024

    Summary

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    Gene symbol
    spats2
    Gene description
    spermatogenesis associated serine rich 2
    See related
    Ensembl:ENSONIG00000016739
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Expression
    Ubiquitous expression in testis (RPKM 8.3), brain (RPKM 4.0) and 9 other tissues See more
    Orthologs
    zebrafish all
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    Genomic context

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    See spats2 in Genome Data Viewer
    Location:
    chromosome: LG20
    Exon count:
    13
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG20 NC_031984.2 (9787582..9809614, complement)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG20 NC_031984.1 (10289492..10311518, complement)

    Linkage Group LG20 - NC_031984.2Genomic Context describing neighboring genes Neighboring gene PAN2-PAN3 deadenylation complex catalytic subunit PAN2 Neighboring gene PAN2-PAN3 deadenylation complex catalytic subunit PAN2 Neighboring gene matrix metalloproteinase-19 Neighboring gene PYM homolog 1, exon junction complex associated factor Neighboring gene transmembrane protein 198 Neighboring gene uncharacterized LOC109196154

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
    • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
    • BioProject: PRJNA78915
    • Analysis date: Fri Dec 29 00:23:36 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spermatogenesis-associated serine-rich protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031984.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      9787582..9809614 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003439093.5 → XP_003439141.1  spermatogenesis-associated serine-rich protein 2

      UniProtKB/TrEMBL
      A0A669CLI3, I3KIZ5
      Related
      ENSONIP00000021090.1, ENSONIT00000021109.2
      Conserved Domains (1) summary
      pfam07139
      Location:81 → 366
      DUF1387; Protein of unknown function (DUF1387)
    Nucleotide Protein
    Heading Accession and Version

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