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    LOC100822956 pyridoxal phosphate homeostasis protein [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100822956, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100822956
    Gene description
    pyridoxal phosphate homeostasis protein
    Locus tag
    BRADI_2g35760v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100822956 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (35949862..35953036)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (36205146..36208352)

    Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106865975 Neighboring gene UPF0481 protein At3g47200 Neighboring gene putative disease resistance protein RGA4 Neighboring gene acyl-coenzyme A oxidase 4, peroxisomal

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources. Mochida K, et al. PLoS One, 2013. PMID 24130698, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyridoxal phosphate homeostasis protein
    Names
    proline synthase co-transcribed bacterial homolog protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      35949862..35953036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003568877.4 → XP_003568925.1  pyridoxal phosphate homeostasis protein

      See identical proteins and their annotated locations for XP_003568925.1

      UniProtKB/TrEMBL
      I1HLS9
      Conserved Domains (1) summary
      cd06822
      Location:14 → 235
      PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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