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    LOC542305 cyclin 3 [ Zea mays ]

    Gene ID: 542305, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542305
    Gene description
    cyclin 3
    Locus tag
    ZEAMMB73_Zm00001d036360
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    cyc3; GRMZM2G073671
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 6 NC_050101.1 (92281211..92285039)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 6 NC_024464.2 (85712860..85716660)

    Chromosome 6 - NC_050101.1Genomic Context describing neighboring genes Neighboring gene terminal acidic SANT 1 Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Protein LAZ1 Neighboring gene 1,4-alpha-glucan-branching enzyme pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning of four cyclins from maize indicates that higher plants have three structurally distinct groups of mitotic cyclins. Renaudin JP, et al. Proc Natl Acad Sci U S A, 1994 Jul 19. PMID 8041798, Free PMC Article
    2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitotic cell cycle phase transition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of cyclin-dependent protein kinase holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin 3
    Names
    CL2529_1
    CycIIIZm
    Cyclin-B2-4
    III
    Zeama;CycB2;1
    cycIII
    cyclin III
    cyclin IIIZm
    umc1186

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001363253.1 → NP_001350182.1  cyclin 3

      Status: VALIDATED

      Source sequence(s)
      BT087413, CD650863
      UniProtKB/TrEMBL
      C4J9B6, Q41731
      Conserved Domains (2) summary
      cd20511
      Location:301 → 417
      CYCLIN_AtCycB-like_rpt2; second cyclin box found in Arabidopsis thaliana B-type cyclins (CycBs) and similar proteins
      cl40454
      Location:150 → 296
      CYCLIN_SF; Cyclin box fold superfamily

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050101.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      92281211..92285039
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035959841.1 → XP_035815734.1  cyclin 3 isoform X1

      UniProtKB/TrEMBL
      C4J9B6, Q41731
      Conserved Domains (2) summary
      cd20511
      Location:301 → 417
      CYCLIN_AtCycB-like_rpt2; second cyclin box found in Arabidopsis thaliana B-type cyclins (CycBs) and similar proteins
      cl40454
      Location:150 → 296
      CYCLIN_SF; Cyclin box fold superfamily

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001111892.1: Suppressed sequence

      Description
      NM_001111892.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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