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    KDM2B lysine demethylase 2B [ Desmodus rotundus (common vampire bat) ]

    Gene ID: 112310458, updated on 30-Mar-2024

    Summary

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    Gene symbol
    KDM2B
    Gene description
    lysine demethylase 2B
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Desmodus rotundus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Desmodontinae; Desmodus
    Orthologs
    human mouse all
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    Genomic context

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    See KDM2B in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2023_02 current HLdesRot8A (GCF_022682495.1) 7 NC_071393.1 (4036477..4136193)
    101 previous assembly ASM294091v2 (GCF_002940915.1) Unplaced Scaffold NW_020093308.1 (4164493..4264038)

    Chromosome 7 - NC_071393.1Genomic Context describing neighboring genes Neighboring gene ORAI calcium release-activated calcium modulator 1 Neighboring gene U6 spliceosomal RNA Neighboring gene ring finger protein 34 Neighboring gene uncharacterized LOC123480407

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein demethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase 2B
    Names
    Putative f-box protein jemma

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_022682495.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HLdesRot8A Primary Assembly

    Genomic

    1. NC_071393.1 Reference HLdesRot8A Primary Assembly

      Range
      4036477..4136193
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_053928894.1 → XP_053784869.1  lysine-specific demethylase 2B isoform X5

    2. XM_053928890.1 → XP_053784865.1  lysine-specific demethylase 2B isoform X1

    3. XM_053928891.1 → XP_053784866.1  lysine-specific demethylase 2B isoform X2

    4. XM_053928892.1 → XP_053784867.1  lysine-specific demethylase 2B isoform X3

    5. XM_053928893.1 → XP_053784868.1  lysine-specific demethylase 2B isoform X4

    6. XM_053928895.1 → XP_053784870.1  lysine-specific demethylase 2B isoform X6

    7. XM_053928897.1 → XP_053784872.1  lysine-specific demethylase 2B isoform X6

    8. XM_053928896.1 → XP_053784871.1  lysine-specific demethylase 2B isoform X6

    Nucleotide Protein
    Heading Accession and Version

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