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    LOC101173745 gap junction delta-3 protein [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101173745, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101173745
    Gene description
    gap junction delta-3 protein
    See related
    EnsemblRapid:ENSORLG00000036625
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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    Genomic context

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    See LOC101173745 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 19 NC_019877.2 (4636245..4639159, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 19 NC_019877.1 (3017498..3020528, complement)

    Chromosome 19 - NC_019877.2Genomic Context describing neighboring genes Neighboring gene marker of proliferation Ki-67 Neighboring gene retinoic acid receptor, alpha a Neighboring gene gap junction delta-3 protein-like Neighboring gene DNA topoisomerase II alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell communication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of connexin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gap junction delta-3 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019877.2 Reference ASM223467v1 Primary Assembly

      Range
      4636245..4639159 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004080232.4 → XP_004080280.1  gap junction delta-3 protein

      UniProtKB/TrEMBL
      A0A3P9JME0, H2LHM2
      Related
      ENSORLP00000058826.1, ENSORLT00000067233.1
      Conserved Domains (3) summary
      smart00037
      Location:47 → 76
      CNX; Connexin homologues
      smart01089
      Location:138 → 202
      Connexin_CCC; Gap junction channel protein cysteine-rich domain
      pfam00029
      Location:3 → 202
      Connexin; Connexin
    Nucleotide Protein
    Heading Accession and Version

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